RnoEX0101801 @ rn6
Exon Skipping
Gene
ENSRNOG00000011627 | Zfr
Description
zinc finger RNA binding protein [Source:RGD Symbol;Acc:1311890]
Coordinates
chr2:62170402-62174499:+
Coord C1 exon
chr2:62170402-62170684
Coord A exon
chr2:62171508-62171652
Coord C2 exon
chr2:62174281-62174499
Length
145 bp
Sequences
Splice sites
3' ss Seq
GTTTGATTTCTTCTCTTTAGGAC
3' ss Score
10.52
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
Exon sequences
Seq C1 exon
CCAGCAGCCAGCTTCGGGTGTAGCCTATTCCCATCCAACTACTGTTGCTAGCTACACTGTCCATCAGGCTCCAGTAGCTGCTCACACAGTTACTGCTGCTTACGCACCAGCAGCCGCCACAGTTGCAGTTGCCAGGCCTGCTCCAGTTGCTGTTGCAGCTGCTGCAACAGCTGCTGCTTATGGAGGCTACCCCACTGCACACACAGCAACCGACTATGGTTACACCCAGAGGCAACAAGAAGCACCACCACCACCACCCCCAGCTACTACACAGAACTACCAG
Seq A exon
GACTCATACTCGTATGTAAGATCCACAGCCCCTGCTGTGGCTTATGATAGTAAGCAGTACTACCAACAGCCCACAGCAACTGCTGCTGCAGTGGCTGCTGCTGCCCAGCCTCAGCCTTCGGTTGCTGAAACCTACTATCAGACAG
Seq C2 exon
CTCCTAAAGCAGGTTATAGTCAAGGTGCAACACAGTATACTCAAGCCCAGCAAGCTCGACAAGTGACAGCCATAAAACCAGCCACCCCAAGTCCAGCTACCACTACTTTCTCCATTTATCCTGTGTCCTCCACTGTACAGCCAGTGGCAGCTGCGGCTACTGTGGTACCGTCCTATACTCAGAGTGCTACTTACAGTACCACAGCAGTTACTTACTCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011627-'8-6,'8-5,9-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.266 A=0.163 C2=0.216
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGCTGCTTATGGAGGCTAC
R:
CTGGCTGTACAGTGGAGGACA
Band lengths:
258-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]