MmuEX0053755 @ mm9
Exon Skipping
Gene
ENSMUSG00000022201 | Zfr
Description
zinc finger RNA binding protein [Source:MGI Symbol;Acc:MGI:1341890]
Coordinates
chr15:12066151-12070407:+
Coord C1 exon
chr15:12066151-12066433
Coord A exon
chr15:12067660-12067804
Coord C2 exon
chr15:12070189-12070407
Length
145 bp
Sequences
Splice sites
3' ss Seq
GTTTCATTTCTTCTCTTTAGGAC
3' ss Score
11.41
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
Exon sequences
Seq C1 exon
CCAGCAGCCAGCTTCGGGTGTAGCCTATTCCCATCCAACTACAGTTGCTAGCTACACTGTCCATCAGGCTCCAGTAGCTGCTCACACAGTTACTGCTGCTTACGCACCAGCAGCCGCCACAGTTGCAGTTGCCAGGCCTGCTCCAGTTGCTGTTGCAGCTGCTGCAACAGCTGCTGCATATGGAGGCTACCCCACTGCACACACAGCAACCGACTATGGTTACACCCAGAGGCAACAAGAAGCACCACCACCACCACCCCCAGCTACTACACAGAACTACCAG
Seq A exon
GACTCATATTCGTATGTAAGATCCACAGCCCCTGCTGTAGCTTATGATAGTAAGCAGTACTACCAACAGCCAACAGCAACTGCTGCTGCTGTAGCTGCTGCTGCCCAGCCTCAGCCTTCTGTTGCTGAAACCTACTATCAGACAG
Seq C2 exon
CCCCTAAAGCAGGTTATAGCCAAGGTGCAACACAGTATACTCAAGCGCAGCAAGCTCGGCAAGTGACAGCCATAAAACCAGCCACACCAAGTCCAGCTACCACTACTTTCTCCATTTATCCTGTGTCCTCCACTGTACAACCGGTGGCAGCTGCAGCTACTGTGGTACCATCCTATACTCAGAGTGCTACTTACAGTACCACAGCAGTTACTTATTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022201-'7-6,'7-5,9-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.261 A=0.177 C2=0.221
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAGTAGCTGCTCACACAGT
R:
TGCACCTTGGCTATAACCTGC
Band lengths:
243-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: