DreEX0086431 @ danRer10
Exon Skipping
Gene
ENSDARG00000027109 | zfr
Description
zinc finger RNA binding protein [Source:ZFIN;Acc:ZDB-GENE-030131-378]
Coordinates
chr5:40537606-40538786:-
Coord C1 exon
chr5:40538504-40538786
Coord A exon
chr5:40538169-40538313
Coord C2 exon
chr5:40537606-40537830
Length
145 bp
Sequences
Splice sites
3' ss Seq
CATTCTGTTTACTGTTGCAGGAC
3' ss Score
10.02
5' ss Seq
CTGGTACGT
5' ss Score
9.57
Exon sequences
Seq C1 exon
TCAACAGCCGGCCGCTGGGGTTGCATACACCCACCCCACTACAGTGGCCAGCTATACTGTACATCAAGCACCTGTGGCAGCGCACACAGTGGCAGCAGCCTATGCCCCTACAGCCGCCACGGTTGCTGTTGCAAGGCCTGCGCCAGTCGCTGTAGCGGCTGCGGCTAATGCTGCAGCTTTTGGGGGATATCAACCAGCCCATGCTGCCACGGATTATGGATATGCTCAGAGACAGCCAGAAGTACCCCCACCACCACCTCCAGTCACCTCACAAAACTACCAG
Seq A exon
GACTCTTATTCGTATGTGCGGTCCACCGCTCCTGCTGTAGCGTATGACAGTAAACAATATTACCAACAACCTGCAGCTACTCCAGCTGTGGCTGCTGCAGCAGCCCAACCACAACCCACTGTTGCTGAATCCTACTATCAGACTG
Seq C2 exon
CACCTAAAACCGGATACAGCCAAGGCGCCACTCCGTACACCCAGACCCAGCAAACGCGTCAGGTTACAGTCGTAAAGCCAGCCACCCCCAGCCCTGCCACCTCAACCTTCTCCATTTACCCAGTGTCCTCTGCAGTACAGCCGGTCGCAGCTGCAGCGGCAGCCTCTGTAGTGCCCTCTTACTCTCAGAGTCCCACCTACAGCACCAATGCAGTCACGTACTCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000027109-'7-7,'7-6,8-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.293 A=0.204 C2=0.289
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGCAGCTTTTGGGGGATAT
R:
ACTGCAGAGGACACTGGGTAA
Band lengths:
250-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]