HsaEX6097595 @ hg19
Exon Skipping
Gene
ENSG00000056097 | ZFR
Description
zinc finger RNA binding protein [Source:HGNC Symbol;Acc:17277]
Coordinates
chr5:32415074-32420208:-
Coord C1 exon
chr5:32419926-32420208
Coord A exon
chr5:32417753-32417897
Coord C2 exon
chr5:32415074-32415292
Length
145 bp
Sequences
Splice sites
3' ss Seq
CTTTCATTCCTTTTCTTTAGGAT
3' ss Score
12.39
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
CCAGCAGCCAGCTTCGGGTGTAGCCTATTCTCATCCAACTACAGTTGCTAGCTACACTGTCCATCAGGCTCCAGTAGCTGCTCACACAGTTACTGCTGCCTATGCACCAGCAGCCGCCACAGTTGCAGTTGCCAGGCCTGCTCCAGTAGCTGTTGCAGCTGCTGCAACAGCTGCTGCTTATGGAGGCTACCCCACTGCACACACAGCAACTGACTATGGTTATACTCAGAGGCAACAAGAAGCACCACCACCACCACCCCCAGCTACTACACAAAACTACCAG
Seq A exon
GATTCATACTCATATGTAAGGTCCACAGCTCCTGCTGTAGCTTATGATAGTAAGCAATACTACCAACAACCAACAGCAACTGCTGCTGCTGTAGCTGCCGCTGCCCAACCTCAGCCTTCTGTTGCTGAAACTTACTATCAGACAG
Seq C2 exon
CCCCCAAAGCAGGTTACAGCCAAGGTGCAACTCAGTATACTCAAGCCCAGCAAACTCGACAAGTGACAGCCATAAAACCAGCCACACCAAGTCCAGCTACCACTACTTTCTCCATCTATCCTGTATCCTCCACCGTACAGCCAGTAGCAGCTGCGGCTACTGTGGTGCCATCCTATACTCAGAGTGCTACTTACAGTACCACAGCAGTTACATATTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000056097-'3-5,'3-4,6-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.263 A=0.160 C2=0.257
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGCTGCTTATGGAGGCTAC
R:
CTGGCTGTACGGTGGAGGATA
Band lengths:
258-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)