BtaEX6075926 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020126 | MYO10
Description
Bos taurus myosin X (MYO10), mRNA. [Source:RefSeq mRNA;Acc:NM_174394]
Coordinates
chr20:56447168-56457810:+
Coord C1 exon
chr20:56447168-56447252
Coord A exon
chr20:56448323-56448426
Coord C2 exon
chr20:56457681-56457810
Length
104 bp
Sequences
Splice sites
3' ss Seq
TTTTGTTTTTCTTTCTGTAGAAG
3' ss Score
9.66
5' ss Seq
ATTGTAAGT
5' ss Score
8.54
Exon sequences
Seq C1 exon
AACCGAGTAGTAAGGCAAAACCCCGGGGAAAGGAATTATCACATATTCTATGCGCTGCTGGCAGGGCTAGGACATGAAGAGAGAG
Seq A exon
AAGAATTTTATTTATCTGTGCCAGAAAACTACCACTACTTGAATCAGTCTGGATGTGTGACAGACAGGACAATCAGTGACCAGGAATCCTTTAGGGAAGTAATT
Seq C2 exon
ATGGCGATGGAGGTCATGCAGTTTAGCAAGGAAGAAGTTCGGGAAGTGTTGAGGTTGCTTGCTGGTATATTACATCTCGGGAACATAGAATTTATCACTGCTGGTGGGGCGCAAGTTTCCTTCAAAACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020126-'22-19,'22-17,23-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.2=100)
A:
PF0006316=Myosin_head=FE(5.1=100)
C2:
PF0006316=Myosin_head=FE(6.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGAGTAGTAAGGCAAAACCCC
R:
GAAACTTGCGCCCCACCAG
Band lengths:
202-306
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]