GgaEX6020521 @ galGal4
Exon Skipping
Gene
ENSGALG00000012954 | MYO10
Description
myosin X [Source:HGNC Symbol;Acc:HGNC:7593]
Coordinates
chr2:75568088-75571371:+
Coord C1 exon
chr2:75568088-75568172
Coord A exon
chr2:75568839-75568942
Coord C2 exon
chr2:75571242-75571371
Length
104 bp
Sequences
Splice sites
3' ss Seq
CTCTTTTCTCCCCTCATCAGATG
3' ss Score
9.82
5' ss Seq
ATTGTGAGT
5' ss Score
7.35
Exon sequences
Seq C1 exon
AATCGTGTAGTAAGACAAAATCCTGGGGAAAGAAATTATCATATATTTTATGCTCTGCTGGCAGGGATAGAAGAGAGAGAGAAAG
Seq A exon
ATGCTTTTTACTTATCTGTACCGGAGAACTACCACTACCTGAATCAGTCTGGATGTATAGTGGATAAGACAATCAGTGACAAGGATTCTTTCAAAGAAGTCATT
Seq C2 exon
ACTGCAATGGAAGTGATGCAGTTCAGCAAGGAGGAGGTGCGAGAAGTTTTGAGGCTGTTGGCTGGCATTTTGCATCTAGGAAACATAGAGTTTATCACTGCTGGTGGGGCACAGGTGTCCTTTAAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012954-'22-19,'22-16,23-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.2=100)
A:
PF0006316=Myosin_head=FE(5.1=100)
C2:
PF0006316=Myosin_head=FE(6.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGTGTAGTAAGACAAAATCCTGGG
R:
TTTTAAAGGACACCTGTGCCCC
Band lengths:
210-314
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]