HsaEX1024779 @ hg38
Exon Skipping
Gene
ENSG00000145555 | MYO10
Description
myosin X [Source:HGNC Symbol;Acc:HGNC:7593]
Coordinates
chr5:16769074-16780608:-
Coord C1 exon
chr5:16780524-16780608
Coord A exon
chr5:16779545-16779648
Coord C2 exon
chr5:16769074-16769203
Length
104 bp
Sequences
Splice sites
3' ss Seq
ATGTTTTTGTCTTTCTGTAGAAG
3' ss Score
9.65
5' ss Seq
ATTGTAAGT
5' ss Score
8.54
Exon sequences
Seq C1 exon
AACCGAGTAGTAAGGCAAAATCCCGGGGAAAGGAATTATCACATATTTTATGCACTGCTGGCAGGGCTGGAACATGAAGAAAGAG
Seq A exon
AAGAATTTTATTTATCTACGCCAGAAAACTACCACTACTTGAATCAGTCTGGATGTGTAGAAGACAAGACAATCAGTGACCAGGAATCCTTTAGGGAAGTTATT
Seq C2 exon
ACGGCAATGGACGTGATGCAGTTCAGCAAGGAGGAAGTTCGGGAAGTGTCGAGGCTGCTTGCTGGTATACTGCATCTTGGGAACATAGAATTTATCACTGCTGGTGGGGCACAGGTTTCCTTCAAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000145555-'59-43,'59-40,60-43
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.2=100)
A:
PF0006316=Myosin_head=FE(10.2=100)
C2:
PF0006316=Myosin_head=FE(13.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCGAGTAGTAAGGCAAAATCCC
R:
TTTGAAGGAAACCTGTGCCCC
Band lengths:
210-314
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains