MmuEX6052944 @ mm10
Exon Skipping
Gene
ENSMUSG00000022272 | Myo10
Description
myosin X [Source:MGI Symbol;Acc:MGI:107716]
Coordinates
chr15:25725196-25732099:+
Coord C1 exon
chr15:25725196-25725280
Coord A exon
chr15:25726420-25726523
Coord C2 exon
chr15:25731970-25732099
Length
104 bp
Sequences
Splice sites
3' ss Seq
CTTTCTTTGTCTTTCTGTAGAAG
3' ss Score
10.28
5' ss Seq
ATCGTAAGT
5' ss Score
10.44
Exon sequences
Seq C1 exon
AACCGAGTAGTGAGGCAGAATCCCGGGGAGAGGAATTATCACATATTCTATGCACTGCTGGCAGGGCTGGACCAGGGAGAGCGAG
Seq A exon
AAGAATTTTATTTATCTTTGCCAGAAAACTACCATTACTTGAATCAGTCTGGGTGTACGGAAGACAAGACGATCAGCGACCAGGAATCCTTCAGACAAGTTATC
Seq C2 exon
ACGGCAATGGAAGTCATGCAATTCAGCAAGGAGGAAGTTCGGGAAGTTTTGAGGTTGCTGGCGGGAATTCTGCATCTCGGCAACATAGAGTTTATCACTGCTGGAGGGGCGCAGATTCCCTTCAAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022272-'14-25,'14-15,23-25=AN
Average complexity
A_C2
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.2=100)
A:
PF0006316=Myosin_head=FE(5.1=100)
C2:
PF0006316=Myosin_head=FE(6.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGAGTAGTGAGGCAGAATCC
R:
TTTTGAAGGGAATCTGCGCCC
Band lengths:
210-314
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types