DreEX6020789 @ danRer10
Exon Skipping
Gene
ENSDARG00000074723 | myo10l1
Description
myosin X-like 1 [Source:ZFIN;Acc:ZDB-GENE-080425-1]
Coordinates
chr6:10910585-10911123:-
Coord C1 exon
chr6:10911039-10911123
Coord A exon
chr6:10910824-10910930
Coord C2 exon
chr6:10910585-10910714
Length
107 bp
Sequences
Splice sites
3' ss Seq
ATATGTCTCTGTGGTTTTAGAAA
3' ss Score
7.5
5' ss Seq
ATGGTAATC
5' ss Score
4.14
Exon sequences
Seq C1 exon
AATCGAGTGGTAAGGCAGAATCCAGGAGAGAGGAACTACCATATATTTTATGCTTTGCTGGCTGGGGCTAGTAAAAGCGAAAAGG
Seq A exon
AAACATATTTTCTGGAAGACTCCCCGGAGTTATTTCATTACTTGAGTCAGTCAGGATGTGTGAAGGACCGCAGTCTCGATGACAAGAAGCTTTTTGATGATGTCATG
Seq C2 exon
GAGGCTCTGAAGGTGATGGAGTTCACGGAGGAAGAAATCAGAGATATGTTTAAATTGCTCTCTGGAGTCCTACAGCTTGGCAATGTGGAGTTCATGACAGCAGGGGGCGCACAGATCACCACCAAACAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074723-'7-9,'7-8,8-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.2=100)
A:
PF0006316=Myosin_head=FE(5.2=100)
C2:
PF0006316=Myosin_head=FE(6.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGAGTGGTAAGGCAGAATCCA
R:
TGTTTGGTGGTGATCTGTGCG
Band lengths:
211-318
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]