DreEX0048525 @ danRer10
Exon Skipping
Gene
ENSDARG00000017004 | myo10
Description
myosin X [Source:ZFIN;Acc:ZDB-GENE-070912-277]
Coordinates
chr2:42798046-42803849:-
Coord C1 exon
chr2:42803765-42803849
Coord A exon
chr2:42801136-42801239
Coord C2 exon
chr2:42798046-42798175
Length
104 bp
Sequences
Splice sites
3' ss Seq
TCTCTCTCGTTTTCTCACAGAGT
3' ss Score
10.16
5' ss Seq
CTGGTGAGA
5' ss Score
7.54
Exon sequences
Seq C1 exon
AATCGTGTCGTGCGTCAAAATCCCGGTGAAAGAAATTATCACATATTCTATGCTCTGCTGGCAGGAACCAGCGCAGAGCAGAAGG
Seq A exon
AGTCCTTCTCCCTCTCCGCTCCGGAGGGTTTTCATTATCTGGGTCAGTCAGGATGTGTGAAGGACAAAGCCATTAATGACACTGAGACGTTTCAGGAAGTGCTG
Seq C2 exon
AATGCACTCAGGACAATGCAGTTTGGAGAGGAGAACATTAAAGAGGTGTTGAGGCTCCTTTCAGGAATCCTACATGTGGGAAACATTGAGTTTTTAACAGCAGGCGGAGCACAAGTTTGCTCCAAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000017004-'11-8,'11-7,12-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.2=100)
A:
PF0006316=Myosin_head=FE(5.1=100)
C2:
PF0006316=Myosin_head=FE(6.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGTGTCGTGCGTCAAAATCC
R:
CTGTTTTGGAGCAAACTTGTGC
Band lengths:
213-317
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]