BtaEX6076054 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021972 | DNAH5
Description
dynein, axonemal, heavy chain 5 [Source:HGNC Symbol;Acc:HGNC:2950]
Coordinates
chr20:59321952-59324931:+
Coord C1 exon
chr20:59321952-59322037
Coord A exon
chr20:59323441-59323762
Coord C2 exon
chr20:59324725-59324931
Length
322 bp
Sequences
Splice sites
3' ss Seq
ACTTAAAAAAAAAATAACAGATT
3' ss Score
0.21
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
Exon sequences
Seq C1 exon
AAAGAGTTGCAGAAGTTCATGGATGCTACATTTGAAAAGATTCAAAACACAAATCAAGCTCTAAGTATGTTAAAGAGATTTGAAAG
Seq A exon
ATTGAACATACCTAATCTTGGTATTGATGACAAGTACCAGCGTATCCTTGAAAACTACGGGGCTGACATTGATATGATCTCGAAGCTGTATACAAAGCAGAAAAACGACCCACCTTTGGCTCGAGACCAGCCTCCCATTGCTGGGAAGATTCTGTGGGCCCGGCAGCTCTTCCACAGGATTCAGCAACCAATGCAGCTTTTTCAGAAGCACCCATCCGTGCTCCGGACTGCGGAAGCGAAGCCAGTGATTCGCAGTTACAACAGGGTGGCCAAGGTCCTCCTGGAGTTTGAGGTTCTCTACCACAGGGCGTGGCTTCAACAA
Seq C2 exon
ACTGAAGAAATTCACGTAGGACTTGAGGCTTCTTTATTGGTGAAGGCTCCTGGCACAGGGGAACTGTTTGTAAACTTTGATCCTCAGATACTAACCTTATTTAGAGAAACCGAGTGCATGTCACAGATGGGTCTACAAGTTTCACCCTTTGCAGCTGCTCTTTTCCAGAAACGAGACACATACAAGAAGAACTTCAGTAACATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021972-'14-13,'14-12,15-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.065 C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(5.0=100)
A:
PF083857=DHC_N1=FE(19.1=100)
C2:
PF083857=DHC_N1=FE(12.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTGCAGAAGTTCATGGATGCT
R:
CTTCATGTTACTGAAGTTCTTCTTGT
Band lengths:
289-611
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]