RnoEX6009083 @ rn6
Exon Skipping
Gene
ENSRNOG00000048363 | Dnah5
Description
dynein, axonemal, heavy chain 5 [Source:RGD Symbol;Acc:1560828]
Coordinates
chr2:80989131-80991840:+
Coord C1 exon
chr2:80989131-80989216
Coord A exon
chr2:80989715-80990036
Coord C2 exon
chr2:80991634-80991840
Length
322 bp
Sequences
Splice sites
3' ss Seq
TCTGTGTGTGTTTCAATCAGATT
3' ss Score
9.06
5' ss Seq
CAGGTGAAT
5' ss Score
6.6
Exon sequences
Seq C1 exon
AGTGAACTGCAAAGGTTCATGGACACCACATTCGAAAAGATTCAAAGCACAAGGCAAGCTCTGAGCACGCTGAAGAAATTCGAAAG
Seq A exon
ATTGAATATACCTAACCTTGGTATTGAGGCGAAATACCAAATAGTTTTTCAGAATTTTGGGACTGACATCGACATGATTTCTAAGCTGTATACGAAACAGAAGTACGATCCTCCCTTGGCTCGCGATCAGCCTCCCATAGCTGGGAAGATCTTGTGGGCCCGGCAGCTATTCCACAGGCTGGAGCAGCCAATGCAACTCTTCCAGCAGCACCCTTTTGTGCTGAGGACTGTGGAGGCCAAACCTGTGATCCGCAGTTATAACAGGATAGCCAAGGTCCTCTTGGAGTTTGAGGTCCTCTACCATAGAGCCTGGCTTCAGCAG
Seq C2 exon
ATTGAAGAAATTCACGTGGGTCTTGAGGCTTCTTTATTGGTGAAGGCTCCAGGCACAGGGCAGTTGTTTGTGAACTTTGATCCTCAGATATTAATCTTATTTAGAGAAACACAGTGCATGTCCCAGATGGGTCTACCTGTGTCACCATTTGCAGCTGCCCTCTTCGAGAAGCGGGACATGTACAAAAAGAACTTCAGTGACATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000048363-'13-14,'13-13,14-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(5.0=100)
A:
PF083857=DHC_N1=FE(19.1=100)
C2:
PF083857=DHC_N1=FE(12.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAAAGGTTCATGGACACCA
R:
CTTCATGTCACTGAAGTTCTTTTTGT
Band lengths:
286-608
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]