GgaEX1020192 @ galGal4
Exon Skipping
Gene
ENSGALG00000012997 | DNAH5
Description
dynein, axonemal, heavy chain 5 [Source:HGNC Symbol;Acc:HGNC:2950]
Coordinates
chr2:76615774-76619556:+
Coord C1 exon
chr2:76615774-76615859
Coord A exon
chr2:76616614-76616935
Coord C2 exon
chr2:76619350-76619556
Length
322 bp
Sequences
Splice sites
3' ss Seq
ATTATTATTTTTCTAATCAGATT
3' ss Score
7.58
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
AGTCAGTTAAAGATTTTTATGGACAATACCTTTGAAAATATTCCGAACACTGAAAGAGCACTGTGTATGTTGAAGAAATTTGAAAG
Seq A exon
ATTACAAATCCCCAATCTTGGCATTAATGAAATGTATCAGAAAATCCTTCAGAACTATGGATATGACATAGAAGCAGTCTGTAAACTCTACACTAGGCAGAAGCAGGATCCTCCACTGGCTCGTAATCTGCCTCCAATAGCTGGTAAGATCTTGTGGGCACGCCACCTATTCCATAGGATCCAGCAGCCCATGAATTCTTTCCAGCAGCACCCAGCTGTTCTGCAAACACCGGATGGCAAGCGCATAATCCACAACTACAACAAAGTAGCGAGAGTTCTTATGGAGTTTGAGGTGATCTATCACAGGGGATGGCTTCAGCAG
Seq C2 exon
ATTGAATTAACTAAAACAAGACTTCAGGCAACTCTCTTGGTAAAATCTCCAGAAACGGGAGAATTATTTGTGAATTTTGACCCTCAAATATTAACTTTAATTAGAGAAACAGATTGCATGGCTCACATGTGCCTTGATATCCCACCATTTGCAAGTGCTATTCAACAGAAGAGAGACTGGTATAAGAATATTGTCCACAGTTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012997-'12-16,'12-15,14-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.009 C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(5.0=100)
A:
PF083857=DHC_N1=FE(19.1=100)
C2:
PF083857=DHC_N1=FE(12.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGACAATACCTTTGAAAATATTCCG
R:
CTGCAAACTGTGGACAATATTCT
Band lengths:
274-596
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]