GgaEX1020192 @ galGal3
Exon Skipping
Gene
ENSGALG00000012997 | DNAH5
Description
NA
Coordinates
chr2:78521708-78525498:+
Coord C1 exon
chr2:78521708-78521793
Coord A exon
chr2:78522556-78522877
Coord C2 exon
chr2:78525292-78525498
Length
322 bp
Sequences
Splice sites
3' ss Seq
ATTATTATTTTTCTAATCAGATT
3' ss Score
7.58
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
AGTCAGTTAAAGATTTTTATGGACAATACCTTTGAAAATATTCCGAACACTGAAAGAGCACTGTGTATGTTGAAGAAATTTGAAAG
Seq A exon
ATTACAAATCCCCAATCTTGGCATTAATGAAATGTATCAGAAAATCCTTCAGAACTATGGATATGACATAGAAGCAGTCTGTAAACTCTACACTAGGCAGAAGCAGGATCCTCCACTGGCTCGTAATCTGCCTCCAATAGCTGGTAAGATCTTGTGGGCACGCCACCTATTCCATAGGATCCAGCAGCCCATGAATTCTTTCCAGCAGCACCCAGCTGTTCTGCAAACACCGGATGGCAAGCGCATAATCCACAACTACAACAAAGTAGCGAGAGTTCTTATGGAGTTTGAGGTGATCTATCACAGGGGATGGCTTCAGCAG
Seq C2 exon
ATTGAATTAACTAAAACAAGACTTCAGGCAACTCTCTTGGTAAAATCTCCAGAAACGGGAGAATTATTTGTGAATTTTGACCCTCAAATATTAACTTTAATTAGAGAAACAGATTGCATGGCTCACATGTGCCTTGATATCCCACCATTTGCAAGTGCTATTCAACAGAAGAGAGACTGGTATAAGAATATTGTCCACAGTTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012997-'11-13,'11-12,12-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.009 C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(5.0=100)
A:
PF083857=DHC_N1=FE(19.1=100)
C2:
PF083857=DHC_N1=FE(12.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGACAATACCTTTGAAAATATTCCG
R:
CTGCAAACTGTGGACAATATTCT
Band lengths:
274-596
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]