MmuEX6053084 @ mm9
Exon Skipping
Gene
ENSMUSG00000022262 | Dnahc5
Description
dynein, axonemal, heavy chain 5 [Source:MGI Symbol;Acc:MGI:107718]
Coordinates
chr15:28175417-28177732:+
Coord C1 exon
chr15:28175417-28175502
Coord A exon
chr15:28176003-28176324
Coord C2 exon
chr15:28177526-28177732
Length
322 bp
Sequences
Splice sites
3' ss Seq
TGTGTGTGTGTTTCAATCAGACT
3' ss Score
7.82
5' ss Seq
CAGGTGAAT
5' ss Score
6.6
Exon sequences
Seq C1 exon
AATGACCTGCAGAGGTTCATGGACATCACATTTGAAAAGATTCCAAGCACGAGGCAAGCTCTAAGCACGCTGAAGAAATTCGAAAG
Seq A exon
ACTGAATATACCTAATCTTGGTATTGAGGAAAAATACCAAATAATTTTCCAGAATTTTGCGACTGACATCGACACGATTTCTAAGCTGTATACGAAACAGAAGTACGATCCGCCCTTGGCTCGCAACCAGCCCCCCATAGCTGGGAAGATCTTGTGGGCCCGGCAGCTATTCCACAGGCTGGAGCAGCCAATGCAACTCTTCCAGCAGCATCCCTTTGTGCTGAGGACTGCGGAGGCCAAACCTGTGATCCGCAGCTATAACAGGATAGCCAAGGTCCTCTTGGAGTTTGAGGTCCTCTACCACAGGGCCTGGCTTCAGCAG
Seq C2 exon
ATTGAAGAAATTCATGCAGGTCTTGAGGCTTCCTTATTGGTGAAGGCTCCAGGCACAGGGGAGTTGTTTGTGAACTTTGATCCTCAGATATTAGTCTTATTTAGAGAAACACAATGCATGTCTCAGTTGGGTCTACCTGTGTCACCGTTTGCAGCTGCCCTCTTCCAGAAGCGGGACATGTTCAAAAAGAATTTCAGTGACATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022262-'12-13,'12-12,13-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(5.0=100)
A:
PF083857=DHC_N1=FE(19.1=100)
C2:
PF083857=DHC_N1=FE(12.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGCAGAGGTTCATGGACAT
R:
TCATGTCACTGAAATTCTTTTTGAAC
Band lengths:
286-608
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: