BtaEX6076071 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017222 | CTNND2
Description
catenin (cadherin-associated protein), delta 2 [Source:HGNC Symbol;Acc:HGNC:2516]
Coordinates
chr20:62228721-62277848:+
Coord C1 exon
chr20:62228721-62228904
Coord A exon
chr20:62266359-62266476
Coord C2 exon
chr20:62277663-62277848
Length
118 bp
Sequences
Splice sites
3' ss Seq
TACATCCTTTTGCTTTGCAGGAA
3' ss Score
10.61
5' ss Seq
AAGGTTTGT
5' ss Score
7.81
Exon sequences
Seq C1 exon
GAGTTCTTTGGAATCTCTCGTCTTGTGATGCACTCAAAATGCCAATCATCCAGGACACCCTGGCAGTGTTGACCAACGCGGTGATTATCCCACACTCAGGCTGGGAAAATTCACCTCTTCAGGACGATCGGAAGATACAGCTGCATTCCTCACAAGTGCTGCGAAATGCCACTGGATGCCTAAG
Seq A exon
GAATGTTAGTTCAGCCGGAGAGGAGGCCCGCAGGAGAATGCGGGAATGTGACGGGCTCACGGACGCGCTGCTTTATGTGATTCAGTCTGCGCTGGGGAGCAGCGAGATCGATAGCAAG
Seq C2 exon
ACCGTTGAAAACTGTGTGTGCATTTTAAGGAATCTTTCGTACCGGCTGGCAGCAGAAACGTCTCAGGGACAGCACATGGGCACCGATGAGCTGGATGGGCTGCTCTGTGGTGAGGCCAATGGCAAAGATGCGGAGAGTTCCGGGTGCTGGGGAAAGAAGAAGAAGAAAAAGAAATCCCAAGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017222-'9-18,'9-17,10-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.032 A=0.000 C2=0.177
Domain overlap (PFAM):
C1:
PF0051418=Arm=PD(16.7=11.3)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACGCGGTGATTATCCCACA
R:
GAACTCTCCGCATCTTTGCCA
Band lengths:
251-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]