DreEX0024898 @ danRer10
Exon Skipping
Gene
ENSDARG00000003779 | ctnnd2b
Description
catenin (cadherin-associated protein), delta 2b [Source:ZFIN;Acc:ZDB-GENE-070912-532]
Coordinates
chr2:30588043-30596461:-
Coord C1 exon
chr2:30596278-30596461
Coord A exon
chr2:30590508-30590625
Coord C2 exon
chr2:30588043-30588228
Length
118 bp
Sequences
Splice sites
3' ss Seq
TGTTCCTGTGTTCTCTACAGGAA
3' ss Score
12.48
5' ss Seq
AAGGTTTGA
5' ss Score
5.13
Exon sequences
Seq C1 exon
GTGTGCTCTGGAACTTGTCTTCATGCGATGCTCTGAAGATGCCCATAATTCAGGATGCTCTGGCAGTGCTGACCAACACAGTCATTATTCCTCACTCGGGATGGGACACCTCGCCCCTCCAGGATGACCGCAAACTGCACCTGCATTCCTCACAGGTGCTCCGCAATGCTACCGGGTGCCTCAG
Seq A exon
GAATGTGAGCTCGGCCGGAGAAGAGGCCCGTCGCAGGATGCGGGAGTGTGAGGGTCTGACTGATGCGCTGCTCTATGTCATCCAGACAGCCCTGGGCACCAGTGAGATCGACAGCAAG
Seq C2 exon
ACCATCGAGAACTGTGTGTGCATCCTGCGGAACCTGTCCTACAGGTTGGCGGCAGAGACGTCTCAGGGGCAGCAGATGGGATCGGAGGAACTGGATGGGGTTCTGTGCACGGATGCCAGCGGGAAGGATGCAGAGAGCTCCGGCTGCTGGGGCAAGAAGAAAAAGAAAAAGAAGAGCCACGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000003779-'22-21,'22-20,23-21
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.015 A=0.050 C2=0.274
Domain overlap (PFAM):
C1:
PF0051418=Arm=PD(16.7=11.3)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCGATGCTCTGAAGATGCC
R:
TCCAGTTCCTCCGATCCCATC
Band lengths:
257-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]