RnoEX0025212 @ rn6
Exon Skipping
Gene
ENSRNOG00000010649 | Ctnnd2
Description
catenin delta 2 [Source:RGD Symbol;Acc:620734]
Coordinates
chr2:83935169-83971641:+
Coord C1 exon
chr2:83935169-83935352
Coord A exon
chr2:83965551-83965668
Coord C2 exon
chr2:83971456-83971641
Length
118 bp
Sequences
Splice sites
3' ss Seq
CATGTTCATTTGCTTTTCAGGAA
3' ss Score
10.75
5' ss Seq
AAGGTTGGT
5' ss Score
8.46
Exon sequences
Seq C1 exon
GAGTCCTTTGGAACCTCTCATCATGCGATGCCCTCAAGATGCCAATCATCCAGGACGCCCTGGCAGTGCTGACCAATGCAGTGATCATCCCTCACTCGGGCTGGGAGAATTCACCTCTTCAGGACGACCGGAAAATACAGCTGCATTCATCACAGGTGCTGCGCAACGCCACTGGGTGCCTAAG
Seq A exon
GAATGTAAGTTCAGCTGGAGAGGAGGCCCGCCGCAGAATGCGGGAGTGTGATGGGCTCACGGATGCCTTGCTGTACGTGATTCAGTCTGCACTGGGGAGCAGTGAGATCGATAGCAAG
Seq C2 exon
ACCGTTGAAAACTGTGTGTGCATCTTGAGGAACCTCTCATACCGGCTAGCAGCAGAAACGTCTCAGGGACAGCACATGGGCACAGACGAGCTGGACGGGCTGCTCTGCGGGGAGGCCAATGGCAAGGACGCAGAGAGTTCTGGGTGCTGGGGCAAGAAGAAGAAGAAAAAGAAATCCCAGGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010649-'23-32,'23-31,24-32
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.032 A=0.000 C2=0.161
Domain overlap (PFAM):
C1:
PF0051418=Arm=PD(16.7=11.3)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGATCATCCCTCACTCGGG
R:
CAGAACTCTCTGCGTCCTTGC
Band lengths:
247-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]