HsaEX6097340 @ hg38
Exon Skipping
Gene
ENSG00000169862 | CTNND2
Description
catenin delta 2 [Source:HGNC Symbol;Acc:HGNC:2516]
Coordinates
chr5:11110858-11159759:-
Coord C1 exon
chr5:11159576-11159759
Coord A exon
chr5:11117450-11117567
Coord C2 exon
chr5:11110858-11111043
Length
118 bp
Sequences
Splice sites
3' ss Seq
CGTGTCCTTTTGCTTTGCAGGAA
3' ss Score
12.26
5' ss Seq
AAGGTTGGT
5' ss Score
8.46
Exon sequences
Seq C1 exon
GAGTCCTTTGGAACCTCTCCTCATGCGATGCACTCAAAATGCCAATCATCCAGGATGCCCTAGCAGTACTGACCAACGCGGTGATTATCCCCCACTCAGGCTGGGAAAATTCGCCTCTTCAGGATGATCGGAAAATACAGCTGCATTCATCACAGGTGCTGCGTAACGCCACCGGGTGCCTAAG
Seq A exon
GAATGTTAGTTCGGCCGGAGAGGAGGCCCGCAGAAGGATGAGAGAGTGTGATGGGCTTACGGATGCCTTGCTGTACGTGATCCAGTCTGCGCTGGGGAGCAGTGAGATCGATAGCAAG
Seq C2 exon
ACCGTTGAAAACTGTGTGTGCATTTTAAGGAACCTCTCGTACCGGCTGGCGGCAGAAACGTCTCAGGGACAGCACATGGGCACGGACGAGCTGGACGGGCTACTCTGTGGCGAGGCCAATGGCAAGGATGCTGAGAGCTCTGGGTGCTGGGGCAAGAAGAAGAAGAAAAAGAAATCCCAAGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000169862-'43-62,'43-56,49-62
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.028 A=0.004 C2=0.157
Domain overlap (PFAM):
C1:
PF0051418=Arm=PD(16.7=11.3)
A:
NO
C2:
NO
Main Skipping Isoform:
ENST00000304623fB13239
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCAGGCTGGGAAAATTCGC
R:
TCTTCTTCTTCTTGCCCCAGC
Band lengths:
257-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains