GgaEX1002866 @ galGal3
Exon Skipping
Gene
ENSGALG00000013001 | CTNND2
Description
NA
Coordinates
chr2:79968676-80005456:+
Coord C1 exon
chr2:79968676-79968859
Coord A exon
chr2:80001851-80001968
Coord C2 exon
chr2:80005271-80005456
Length
118 bp
Sequences
Splice sites
3' ss Seq
CCTTTGCTGTTGCCTTACAGGAA
3' ss Score
11.41
5' ss Seq
AAGGTTTGT
5' ss Score
7.81
Exon sequences
Seq C1 exon
GAGTTCTCTGGAATCTCTCTTCCTGTGATGCACTGAAAATGCCAATCATCCAGGATGCCCTCGCAGTGTTGACCAATGCAGTGATCATCCCACACTCTGGATGGGAAAACTCTCCACTCCAGGATGATCATAAAATACAACTTCATTCATCACAGGTGCTGCGCAATGCCACTGGGTGCCTAAG
Seq A exon
GAATGTCAGCTCTGCTGGAGAGGAGGCCCGCAGAAGGATGAGGGAGTGTGATGGCCTGACAGATGCATTGCTGTACGTGATCCAGTCTGCTCTGGGGAGCAGTGAAATTGATAGTAAG
Seq C2 exon
ACCGTTGAAAACTGTGTGTGCATTTTGAGGAACCTCTCATACAGGCTAGCTGCAGAAACATCTCAGGGACAGCAGATGGGAACAGATGAGCTTGATGGATTACTCTGTGGTGATGCCAATGGAAAAGATGCAGAGAGTTCAGGATGCTGGGGGAAGAAGAAGAAGAAAAAGAAATCACAGGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013001-'7-11,'7-10,9-11=AN
Average complexity
A_S
Mappability confidence:
89%=100=75%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.032 A=0.005 C2=0.155
Domain overlap (PFAM):
C1:
PF0051418=Arm=PD(16.7=11.3)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCACACTCTGGATGGGAAA
R:
TTCTTCCCCCAGCATCCTGAA
Band lengths:
255-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]