BtaEX6076073 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017222 | CTNND2
Description
catenin (cadherin-associated protein), delta 2 [Source:HGNC Symbol;Acc:HGNC:2516]
Coordinates
chr20:62134655-62228904:+
Coord C1 exon
chr20:62134655-62134787
Coord A exon
chr20:62173847-62174060
Coord C2 exon
chr20:62228721-62228904
Length
214 bp
Sequences
Splice sites
3' ss Seq
TCTCTCCTTCACTTCTTCAGATA
3' ss Score
10.07
5' ss Seq
CAGGTCAGA
5' ss Score
7.41
Exon sequences
Seq C1 exon
AGAGTTTGGATGGAGAGACCCGGAGCTACCTGAAGTGATACAGATGTTACAACATCAGTTTCCTTCCGTCCAGTCTAATGCTGCAGCCTATTTACAGCACCTCTGTTTTGGAGACAACAAAATTAAAGCCGAG
Seq A exon
ATAAGGAGACAAGGGGGCATCCAGCTCCTGGTGGACTTGCTGGACCATCGGATGACTGAAGTCCACCGTAGCGCCTGTGGCGCCTTGAGAAACTTGGTGTACGGGAAGGCCAATGATGACAACAAAATCGCCCTGAAGAACTGTGGCGGGATCCCAGCCCTGGTGCGGCTGCTCCGCAAGACCACTGACTTGGAGATCCGGGAGCTGGTCACAG
Seq C2 exon
GAGTTCTTTGGAATCTCTCGTCTTGTGATGCACTCAAAATGCCAATCATCCAGGACACCCTGGCAGTGTTGACCAACGCGGTGATTATCCCACACTCAGGCTGGGAAAATTCACCTCTTCAGGACGATCGGAAGATACAGCTGCATTCCTCACAAGTGCTGCGAAATGCCACTGGATGCCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017222-'7-14,'7-13,8-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.156 A=0.000 C2=0.032
Domain overlap (PFAM):
C1:
PF0051418=Arm=PD(90.0=80.0),PF0051418=Arm=PU(14.6=13.3)
A:
PF0051418=Arm=PD(80.5=45.8),PF0051418=Arm=PU(81.0=47.2)
C2:
PF0051418=Arm=PD(16.7=11.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGGATGGAGAGACCCGGAG
R:
GCATTTCGCAGCACTTGTGAG
Band lengths:
298-512
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]