DreEX0024902 @ danRer10
Exon Skipping
Gene
ENSDARG00000003779 | ctnnd2b
Description
catenin (cadherin-associated protein), delta 2b [Source:ZFIN;Acc:ZDB-GENE-070912-532]
Coordinates
chr2:30590508-30606246:-
Coord C1 exon
chr2:30606114-30606246
Coord A exon
chr2:30603118-30603331
Coord C2 exon
chr2:30590508-30590625
Length
214 bp
Sequences
Splice sites
3' ss Seq
TGTGTGGCTCTGTGTATCAGATA
3' ss Score
7.39
5' ss Seq
CAGGTACTC
5' ss Score
7.04
Exon sequences
Seq C1 exon
GGAATTTGGCTGGAGGGATCCGGAGCTGCCGGAGGTCATCCAAATGCTGCAGCACCAGTTTCCATCGGTACAGTCCAATGCTGCCGCTTACCTCCAGCACTTGTGCTTTGGAGACAACAAGATCAAATCAGAG
Seq A exon
ATACGGAGGCAGGGTGGCATCCAGCTGCTGGTGGACTTGCTGGATCACCGTATGACCGACGTGCACAGGAGTGCCTGCGGTGCACTCAGAAACCTGGTTTATGGCAAGGCCAACGATGACAACAAGATTGCCTTGAAGAACTGCGGCGGCATCCCTGCACTCGTGCGACTCCTGCGCAAGACAACAGACGTGGAGATCAGAGAGCTGCTCACAG
Seq C2 exon
GAATGTGAGCTCGGCCGGAGAAGAGGCCCGTCGCAGGATGCGGGAGTGTGAGGGTCTGACTGATGCGCTGCTCTATGTCATCCAGACAGCCCTGGGCACCAGTGAGATCGACAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000003779_MULTIEX1-10/11=9-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.106 A=0.000 C2=0.050
Domain overlap (PFAM):
C1:
PF0051418=Arm=PD(90.0=80.0),PF0051418=Arm=PU(14.6=13.3)
A:
PF0051418=Arm=PD(80.5=45.8),PF0051418=Arm=PU(81.0=47.2)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAATTTGGCTGGAGGGATCCG
R:
TTGCTGTCGATCTCACTGGTG
Band lengths:
249-463
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]