GgaEX1002870 @ galGal3
Exon Skipping
Gene
ENSGALG00000013001 | CTNND2
Description
NA
Coordinates
chr2:79925270-79968859:+
Coord C1 exon
chr2:79925270-79925402
Coord A exon
chr2:79949060-79949273
Coord C2 exon
chr2:79968676-79968859
Length
214 bp
Sequences
Splice sites
3' ss Seq
ATCATTTTGGCCTGTTTCAGATA
3' ss Score
8.87
5' ss Seq
CAGGTTTGA
5' ss Score
5.11
Exon sequences
Seq C1 exon
AGAGTTTGGATGGCGAGATCCAGAGCTTCCAGAAGTTATACAGATGTTACAGCATCAATTTCCGTCAGTACAGTCCAATGCTGCAGCCTACTTACAGCACCTCTGTTTTGGAGACAATAAAATAAAAGCAGAG
Seq A exon
ATAAGAAGACAAGGTGGGATACAATTACTGGTGGACCTATTGGACCATCGGATGACAGAAGTCCACCGTAGTGCCTGTGGAGCTTTGAGAAATTTGGTGTATGGGAAGGCAAATGATGACAACAAAATAGCTCTGAAAAACTGTGGTGGTATTCCAGCATTAGTACGGTTACTCCGCAAGACTACAGATTTGGAAATCAGAGAACTGGTCACAG
Seq C2 exon
GAGTTCTCTGGAATCTCTCTTCCTGTGATGCACTGAAAATGCCAATCATCCAGGATGCCCTCGCAGTGTTGACCAATGCAGTGATCATCCCACACTCTGGATGGGAAAACTCTCCACTCCAGGATGATCATAAAATACAACTTCATTCATCACAGGTGCTGCGCAATGCCACTGGGTGCCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013001-'5-8,'5-7,6-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.178 A=0.000 C2=0.032
Domain overlap (PFAM):
C1:
PF0051418=Arm=PD(90.0=80.0),PF0051418=Arm=PU(14.6=13.3)
A:
PF0051418=Arm=PD(80.5=45.8),PF0051418=Arm=PU(81.0=47.2)
C2:
PF0051418=Arm=PD(16.7=11.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGTTTGGATGGCGAGATCC
R:
CGCAGCACCTGTGATGAATGA
Band lengths:
296-510
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]