MmuEX6053107 @ mm10
Exon Skipping
Gene
ENSMUSG00000022240 | Ctnnd2
Description
catenin (cadherin associated protein), delta 2 [Source:MGI Symbol;Acc:MGI:1195966]
Coordinates
chr15:30775099-30847411:+
Coord C1 exon
chr15:30775099-30775231
Coord A exon
chr15:30806686-30806899
Coord C2 exon
chr15:30847228-30847411
Length
214 bp
Sequences
Splice sites
3' ss Seq
TGTGTCCCTTGTTCTTTCAGATA
3' ss Score
13.17
5' ss Seq
CAGGTTAGA
5' ss Score
5.94
Exon sequences
Seq C1 exon
GGAGTTTGGATGGAGAGACCCGGAGCTGCCTGAAGTGATACAGATGTTACAGCACCAGTTCCCTTCAGTCCAGTCCAATGCTGCAGCTTACCTGCAACACCTCTGTTTTGGAGACAATAAAATTAAGGCAGAG
Seq A exon
ATAAGGAGACAAGGAGGGATACAGCTCCTGGTGGACCTGCTGGATCACCGAATGACAGAAGTCCACCGTAGTGCCTGTGGGGCTCTGAGGAACCTGGTGTATGGGAAGGCCAATGATGATAACAAAATCGCCCTGAAAAACTGTGGTGGTATCCCAGCGCTGGTGAGACTCCTTCGCAAGACCACAGACCTGGAGATCCGGGAGCTGGTCACAG
Seq C2 exon
GAGTCCTTTGGAACCTCTCATCATGTGATGCACTCAAAATGCCAATCATCCAGGACGCCCTGGCAGTGCTGACCAATGCGGTGATTATCCCTCACTCGGGCTGGGAGAATTCACCTCTTCAGGATGATCGGAAAATACAGCTGCATTCATCACAGGTGCTGCGCAACGCCACTGGGTGCCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022240_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.156 A=0.000 C2=0.032
Domain overlap (PFAM):
C1:
PF0051418=Arm=PD(90.0=80.0),PF0051418=Arm=PU(14.6=13.3)
A:
PF0051418=Arm=PD(80.5=45.8),PF0051418=Arm=PU(81.0=47.2)
C2:
PF0051418=Arm=PD(16.7=11.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTGGATGGAGAGACCCGGA
R:
GCAGCACCTGTGATGAATGCA
Band lengths:
292-506
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types