RnoEX0025211 @ rn6
Exon Skipping
Gene
ENSRNOG00000010649 | Ctnnd2
Description
catenin delta 2 [Source:RGD Symbol;Acc:620734]
Coordinates
chr2:83836462-83935352:+
Coord C1 exon
chr2:83836462-83836594
Coord A exon
chr2:83885475-83885688
Coord C2 exon
chr2:83935169-83935352
Length
214 bp
Sequences
Splice sites
3' ss Seq
TGTGTCCCTTGTTCTTTCAGATA
3' ss Score
13.17
5' ss Seq
CAGGTTAGA
5' ss Score
5.94
Exon sequences
Seq C1 exon
GGAGTTCGGATGGAGAGACCCGGAGCTACCTGAAGTGATACAGATGTTACAGCATCAGTTCCCTTCTGTCCAGTCCAACGCTGCAGCTTACCTGCAACACCTCTGCTTCGGAGACAATAAGATCAAGGCAGAG
Seq A exon
ATAAGGAGACAAGGTGGGATACAGCTCCTGGTGGACCTGCTGGATCACCGGATGACAGAAGTCCACCGTAGTGCCTGTGGGGCTCTGAGGAACCTGGTATATGGAAAGGCCAATGATGATAACAAAATCGCCCTGAAAAACTGTGGTGGTATCCCAGCACTGGTGAGACTCCTTCGCAAGACCACAGACCTGGAGATCCGGGAACTGGTCACAG
Seq C2 exon
GAGTCCTTTGGAACCTCTCATCATGCGATGCCCTCAAGATGCCAATCATCCAGGACGCCCTGGCAGTGCTGACCAATGCAGTGATCATCCCTCACTCGGGCTGGGAGAATTCACCTCTTCAGGACGACCGGAAAATACAGCTGCATTCATCACAGGTGCTGCGCAACGCCACTGGGTGCCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010649-'21-29,'21-24,22-29
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.178 A=0.000 C2=0.032
Domain overlap (PFAM):
C1:
PF0051418=Arm=PD(90.0=80.0),PF0051418=Arm=PU(14.6=13.3)
A:
PF0051418=Arm=PD(80.5=45.8),PF0051418=Arm=PU(81.0=47.2)
C2:
PF0051418=Arm=PD(16.7=11.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGTTCGGATGGAGAGACCC
R:
GCACCTGTGATGAATGCAGCT
Band lengths:
292-506
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]