BtaEX6076659 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016158 | ACAN
Description
aggrecan [Source:HGNC Symbol;Acc:HGNC:319]
Coordinates
chr21:20865854-20868151:+
Coord C1 exon
chr21:20865854-20865936
Coord A exon
chr21:20867022-20867166
Coord C2 exon
chr21:20867969-20868151
Length
145 bp
Sequences
Splice sites
3' ss Seq
TTCCCCAATCCCACCCACAGCAA
3' ss Score
6.79
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
ACAATGCCCAGGACTACCAGTGGATCGGCCTGAACGACAAGACCATCGAAGGGGACTTCCGCTGGTCAGATGGACACTCCTTG
Seq A exon
CAATTTGAGAACTGGCGCCCCAACCAGCCTGACAACTTCTTTGCCACTGGGGAGGACTGTGTGGTGATGATCTGGCATGAGAAGGGCGAGTGGAACGATGTCCCATGTAATTACCAGCTACCCTTCACCTGTAAAAAGGGCACAG
Seq C2 exon
TGGCCTGCGGAGAGCCCCCCGTGGTGGAGCATGCCAGAATCTTCGGACAGAAGAAGGACCGATACGAGATCAATGCCCTGGTGCGGTACCAGTGCACCGAGGGCTTCATCCAGCGCCATGTGCCCACCATCCGGTGCCAGCCCAGCGGGCACTGGGAGGAGCCTCGGATCACCTGCACAGACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016158-'17-16,'17-15,18-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.036 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=FE(25.5=100)
A:
PF0005916=Lectin_C=PD(42.5=91.8)
C2:
PF0008415=Sushi=WD(100=91.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAATGCCCAGGACTACCAGT
R:
CAGGTGATCCGAGGCTCCTC
Band lengths:
258-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]