HsaEX6076319 @ hg19
Exon Skipping
Gene
ENSG00000157766 | ACAN
Description
aggrecan [Source:HGNC Symbol;Acc:319]
Coordinates
chr15:89415234-89417255:+
Coord C1 exon
chr15:89415234-89415316
Coord A exon
chr15:89416112-89416256
Coord C2 exon
chr15:89417073-89417255
Length
145 bp
Sequences
Splice sites
3' ss Seq
TTCCCCACTCCCACCCACAGCAA
3' ss Score
7.72
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
ACAATGCCCAAGACTACCAGTGGATCGGCCTGAACGACAGGACCATCGAAGGGGACTTCCGCTGGTCAGATGGACACCCCATG
Seq A exon
CAATTTGAGAACTGGCGCCCCAACCAGCCTGACAACTTTTTTGCCGCTGGAGAGGACTGTGTGGTGATGATCTGGCACGAGAAGGGCGAGTGGAATGATGTTCCCTGCAATTACCACCTCCCCTTCACGTGTAAAAAGGGCACAG
Seq C2 exon
TGGCCTGCGGAGAGCCCCCTGTGGTGGAGCATGCCAGGACCTTCGGGCAGAAGAAGGACCGGTATGAGATCAATTCCCTGGTGCGGTACCAGTGCACAGAGGGGTTTGTCCAGCGCCACATGCCCACCATCCGGTGCCAGCCCAGCGGGCACTGGGAGGAGCCTCAGATCACCTGCACAGACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000157766-'18-19,'18-18,19-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.079 A=0.094 C2=0.145
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=FE(25.5=100)
A:
PF0005916=Lectin_C=PD(42.5=91.8)
C2:
PF0008415=Sushi=WD(100=91.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCCAAGACTACCAGTGGAT
R:
GATCTGAGGCTCCTCCCAGTG
Band lengths:
249-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)