GgaEX6008110 @ galGal4
Exon Skipping
Gene
ENSGALG00000006725 | ACAN
Description
aggrecan core protein precursor [Source:RefSeq peptide;Acc:NP_990286]
Coordinates
chr10:12541426-12543037:-
Coord C1 exon
chr10:12542955-12543037
Coord A exon
chr10:12542477-12542621
Coord C2 exon
chr10:12541426-12541608
Length
145 bp
Sequences
Splice sites
3' ss Seq
CAGGTGTTCTCTCCCTCCAGCAA
3' ss Score
8.89
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GCCATGCACAAGACTATCAGTGGATCGGCCTCAGTGACAGAGCCGTGGAGAATGATTTCCGCTGGTCTGATGGACACTCGCTG
Seq A exon
CAATTTGAGAACTGGCGGCCCAACCAACCTGACAACTTCTTCTCCGCGGGCGAGGACTGCGTTGTGATGATCTGGCATGAGCAAGGCGAATGGAACGACGTCCCCTGCAACTATCACCTGCCTTTCACGTGCAAGAAGGGAACAG
Seq C2 exon
TTGCCTGTGGGGACCCACCTGTAGTGGAGAACGCGCGGACCTTTGGCCGGAAGAAGGACCGCTATGAGATCAACTCCCTGGTGCGGTACCAGTGTGACCACGGCTACATCCAGCGCCACGTGCCCACCATCCGCTGCCAACCCAACGGGCACTGGGAGGAACCGCGGATATCCTGCACAAACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006725-'14-17,'14-16,15-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.016
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=FE(25.5=100)
A:
PF0005916=Lectin_C=PD(42.5=91.8)
C2:
PF0008415=Sushi=WD(100=91.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATCAGTGGATCGGCCTCAGT
R:
GTTTGTGCAGGATATCCGCGG
Band lengths:
251-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]