MmuEX6011613 @ mm10
Exon Skipping
Gene
ENSMUSG00000030607 | Acan
Description
aggrecan [Source:MGI Symbol;Acc:MGI:99602]
Coordinates
chr7:79111955-79113837:+
Coord C1 exon
chr7:79111955-79112037
Coord A exon
chr7:79112674-79112818
Coord C2 exon
chr7:79113655-79113837
Length
145 bp
Sequences
Splice sites
3' ss Seq
TTTGCCTCTCCTGTCCACAGCAA
3' ss Score
10.59
5' ss Seq
CCGGTAAGA
5' ss Score
10.1
Exon sequences
Seq C1 exon
AAAATGCTCAAGACTACCAGTGGATCGGTCTGAATGACAGGACTATCGAAGGGGACTTCCGCTGGTCTGACGGACACTCTCTG
Seq A exon
CAATTTGAGAAGTGGCGTCCAAACCAGCCTGACAACTTCTTTGCCACCGGAGAGGACTGTGTGGTGATGATCTGGCATGAGAGAGGCGAATGGAACGACGTCCCCTGCAATTACCAGCTGCCCTTCACGTGTAAAAAGGGCACCG
Seq C2 exon
TGGCCTGTGGAGACCCCCCAGTGGTGGAGCATGCTAGAACCCTCGGGCAGAAGAAAGATCGCTACGAGATCAGCTCCCTGGTGCGGTACCAGTGCACTGAGGGCTTTGTCCAGCGCCACGTGCCCACCATCCGGTGCCAGCCCAGCGGGCACTGGGAAGAGCCTCGAATCACCTGCACAGACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030607-'8-18,'8-16,19-18=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.161
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=FE(25.5=100)
A:
PF0005916=Lectin_C=PD(42.5=91.8)
C2:
PF0008415=Sushi=WD(100=91.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTACCAGTGGATCGGTCTGA
R:
GTCTGTGCAGGTGATTCGAGG
Band lengths:
253-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types