DreEX6102154 @ danRer10
Exon Skipping
Gene
ENSDARG00000045799 | acanb
Description
aggrecan b [Source:ZFIN;Acc:ZDB-GENE-100422-16]
Coordinates
chr25:19116227-19116918:-
Coord C1 exon
chr25:19116836-19116918
Coord A exon
chr25:19116586-19116730
Coord C2 exon
chr25:19116227-19116409
Length
145 bp
Sequences
Splice sites
3' ss Seq
GTGCTATTTTTGTTTTACAGGAA
3' ss Score
11.11
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
CTCAAGCTCAAGATTATCAGTGGATAGGGCTAAATGATAAGGATGTGCAAAACGAGTTCCGTTGGACAGATGGAAGTCCTTTG
Seq A exon
GAATATGAAAACTGGAGACCCAATCAGCCAGATAATTACTTTAGCACAGGAGAAGATTGTGTTGTAATGATATGGCATGAGAATGGCCAGTGGAATGATGTACCTTGCAACTACCATCTTCCTTTCACTTGCAAGAGTGAACCTG
Seq C2 exon
TCACATGTTCAACACCTCCTGAGGTGCAGAATGCACGGATGCTTGGGAACAGCAAAGATCGCTACCCAGTTAATTCTTTCATTCGATACCAGTGTAACAGTGGGTTTACACAGCGCCACCTTTCTGTGGTGCGCTGTTTACCAGATGGTCAGTGGGAAAAGCCTCGAGTTGAATGCATAAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000045799-'16-17,'16-16,17-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.129
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=FE(25.5=100)
A:
PF0005916=Lectin_C=PD(42.5=91.8)
C2:
PF0008415=Sushi=WD(100=91.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCAAGATTATCAGTGGATAGGGC
R:
CTCGAGGCTTTTCCCACTGAC
Band lengths:
246-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]