BtaEX6077591 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000005844 | SCAMP2
Description
Bos taurus secretory carrier membrane protein 2 (SCAMP2), mRNA. [Source:RefSeq mRNA;Acc:NM_001102170]
Coordinates
chr21:34222604-34229099:+
Coord C1 exon
chr21:34222604-34222763
Coord A exon
chr21:34223915-34224016
Coord C2 exon
chr21:34228982-34229099
Length
102 bp
Sequences
Splice sites
3' ss Seq
ATTTCCCCCTCTCTCCACAGGTC
3' ss Score
15.24
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
TGCATTCAGTGACTCTGTTTCTGAACCTGCTTGCCTGCCTGGCCTGGTTCTTAGTCGACACCTCCAGGGGAGTAGACTTCGGCCTCTCCATCCTGTGGTTTGTGATCTTCACCCCCTGTGCCTTCCTTTGTTGGTATCGACCCATCTATAAGGCTTTCAG
Seq A exon
GTCTGACAACTCTTTCAGCTTCTTCGTGTTCTTCTTTGTATTTTTCTGTCAAATAGGGATCTACATCATCCAGTTGATCGGCATCCCTAGCCTTGGGGACAG
Seq C2 exon
TGGTTGGATTGCAGCCCTGTCTACGATGAAGCACAACTTGGCTGTGTCGGTCATCATGATGGTGGTGGCTGGCTTCTTCACCCTCTGTGCCGTGCTCTCACTCTTCCTCCTGAAGCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005844-'13-18,'13-13,14-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF041448=SCAMP=FE(29.8=100)
A:
PF041448=SCAMP=FE(19.1=100)
C2:
PF041448=SCAMP=FE(21.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTTCTGAACCTGCTTGCCT
R:
TCAGGAGGAAGAGTGAGAGCA
Band lengths:
258-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]