DreEX0064332 @ danRer10
Exon Skipping
Gene
ENSDARG00000010279 | scamp2
Description
secretory carrier membrane protein 2 [Source:ZFIN;Acc:ZDB-GENE-040426-2702]
Coordinates
chr25:2893349-2897513:-
Coord C1 exon
chr25:2897354-2897513
Coord A exon
chr25:2896049-2896150
Coord C2 exon
chr25:2893349-2893466
Length
102 bp
Sequences
Splice sites
3' ss Seq
GTGTGTATTTGTTCCTCCAGGTC
3' ss Score
11.65
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GGGAGTGTGTGACGCTGTTTCTGAATGTTCTGGCGTGTCTGGCTGATTTCACCACTAACTCAGAGGCAGGCGTTGACTTCGGCCTCTCCATCCTCTGGTTCATCCTCTTCGCTCCCTGCTCCTTCATCTGCTGGTTCAGGCCCGTCTATAAGGCCTTCAG
Seq A exon
GTCTGACAGCTCCTTCAATTTCTTCTTCTTCTTCTTCGTTTTCTTCGCTCAAATCGTCATTTCCGTCATCCAGGCTGTGGGGATTCCCAAATGGGGAAACAG
Seq C2 exon
CGGCTGGATTTCCGCCATATCAGTGATCGGCTCTAATAAAGCAGTGGGAGCCATTATGATGGTGGTTGCGGCTTTCTTTACAGCCGCTGCGGCGCTCTCTGTCGTTTTACTCAAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000010279-'7-10,'7-7,9-10
Average complexity
C1
Mappability confidence:
86%=75=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF041448=SCAMP=FE(29.8=100)
A:
PF041448=SCAMP=FE(19.1=100)
C2:
PF041448=SCAMP=FE(21.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAATGTTCTGGCGTGTCTGG
R:
AGTAAAACGACAGAGAGCGCC
Band lengths:
250-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]