GgaEX0001962 @ galGal4
Exon Skipping
Gene
ENSGALG00000001689 | SCAMP2
Description
secretory carrier membrane protein 2 [Source:HGNC Symbol;Acc:HGNC:10564]
Coordinates
chr10:1907371-1910132:+
Coord C1 exon
chr10:1907371-1907499
Coord A exon
chr10:1908672-1908773
Coord C2 exon
chr10:1910015-1910132
Length
102 bp
Sequences
Splice sites
3' ss Seq
TGCTGCTGTCTCTCCTGCAGGTC
3' ss Score
13.05
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
CGAGACAGAACAACTGGCCACCCCTCCCCAGGAAGTGTCCGATCAAGCCGTGCTTCTATCAGGACTTTTCTGCAGACATCCCAGCTGACTACCAGCGGATATGCAAGATGCTTTACTACTTGTGGATGC
Seq A exon
GTCTGACAGCTCCTTCAGCTTCTTCGTCTTCTTTTTCGTCTTCTTCTGCCAAATAGCAATCTACATCATCCAGGCTGTCGGCATCCCTGGCTGGGGAGACAG
Seq C2 exon
CGGCTGGATTGCGGCGCTGTCGGAGCTGCATAGGAACACGGCCGTGGCCATCATCATGATGGTGGTGGCAGGGTTCTTCACGCTCTGTGCAGTCCTCTCGCTCTTCCTCCTCAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001689_MULTIEX1-2/4=C1-4
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.068 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF117403=KfrA_N=PD(3.0=6.8),PF120723=DUF3552=PD(13.0=13.6),PF041448=SCAMP=PU(30.4=95.5)
A:
PF041448=SCAMP=FE(19.1=100)
C2:
PF041448=SCAMP=FE(21.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAACAACTGGCCACCCC
R:
CTGCTTGAGGAGGAAGAGCGA
Band lengths:
242-344
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]