RnoEX0078296 @ rn6
Exon Skipping
Gene
ENSRNOG00000019136 | Scamp2
Description
secretory carrier membrane protein 2 [Source:RGD Symbol;Acc:68348]
Coordinates
chr8:62360678-62366619:+
Coord C1 exon
chr8:62360678-62360837
Coord A exon
chr8:62362036-62362137
Coord C2 exon
chr8:62366499-62366619
Length
102 bp
Sequences
Splice sites
3' ss Seq
ACTTCTTTCTCTCTCCACAGGTC
3' ss Score
15.52
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
TGCATTCAGTGACTCTGTTTCTAAACCTGCTTGCATGCCTGGCCTGGTTCACAAGTGACGCAGCTAATGGAACAGCCTTTGGCCTCTCCATCCTTTGGTTTCTGATTTTCACGCCCTGTGCCTTCCTTTGTTGGTACCGACCCATCTACAAGGCTTTCAG
Seq A exon
GTCTGACAACTCTTTCAGCTTCTTCGTGTTCTTTTTTGTATTTTTTTGTCAAATAGGAATCTACTTCATCCAGTTGATTGGCTTGCCTAACTTGGGGACCAG
Seq C2 exon
TGGTTGGCTCGCAGCCCTCTCTACAGTGAATAAGGGGCCCTTAGCTGTGACCATCATCATGATGGTAGTGGCTGGCTTCTTTACCCTCTGTGCTGGGCTCTCACTCTTCCTCCTGCAGCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019136-'14-18,'14-15,16-18
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF041448=SCAMP=FE(29.6=100)
A:
PF041448=SCAMP=FE(19.0=100)
C2:
PF041448=SCAMP=FE(22.3=100)
Main Skipping Isoform:
ENSRNOT00000066923fB12934
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAAACCTGCTTGCATGCCTGG
R:
TGCAGGAGGAAGAGTGAGAGC
Band lengths:
256-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]