MmuEX6066208 @ mm10
Exon Skipping
Gene
ENSMUSG00000040188 | Scamp2
Description
secretory carrier membrane protein 2 [Source:MGI Symbol;Acc:MGI:1346518]
Coordinates
chr9:57581490-57587200:+
Coord C1 exon
chr9:57581490-57581649
Coord A exon
chr9:57582852-57582953
Coord C2 exon
chr9:57587080-57587200
Length
102 bp
Sequences
Splice sites
3' ss Seq
ACCTCCTTCTCTCTCCACAGGTC
3' ss Score
15.4
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
TGCATTCAGTGACTCTGTTTCTAAACCTGCTTGCGTGCCTGGCCTGGTTCACAAGTGACGCAGCCAATGGAACAGCCTTTGGCCTCTCCATCCTTTGGTTTCTGATCTTCACTCCCTGTGCCTTCCTTTGTTGGTACCGACCCATCTACAAGGCTTTCAG
Seq A exon
GTCTGACAACTCTTTCAGCTTCTTCGTGTTCTTTTTTGTATTTTTTTGTCAAATAGGGATCTACTTCATCCAGTTGATTGGCTTGCCTAACTTGGGGACCAG
Seq C2 exon
TGGTTGGCTTGCAGCCCTATCTACGATGAAAAATGGGCCCTTAGCTGTGACCATCATCATGATGGTAGTGGCTGGCTTCTTTACCCTCTGTGCTGGGCTTTCACTCTTCCTCCTGCAGCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040188_MULTIEX2-2/2=1-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF041448=SCAMP=FE(29.6=100)
A:
PF041448=SCAMP=FE(19.0=100)
C2:
PF041448=SCAMP=FE(22.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTAAACCTGCTTGCGTGCC
R:
GAGGAAGAGTGAAAGCCCAGC
Band lengths:
254-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types