BtaEX6077755 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021844 | COCH
Description
Bos taurus coagulation factor C homolog, cochlin (Limulus polyphemus) (COCH), mRNA. [Source:RefSeq mRNA;Acc:NM_001077842]
Coordinates
chr21:41950745-41952677:+
Coord C1 exon
chr21:41950745-41950901
Coord A exon
chr21:41951981-41952114
Coord C2 exon
chr21:41952615-41952677
Length
134 bp
Sequences
Splice sites
3' ss Seq
CTGCTCTTCTTGTGTTGCAGGGG
3' ss Score
10.62
5' ss Seq
CAAGTAGGT
5' ss Score
7.33
Exon sequences
Seq C1 exon
TTCCCATCCCTATCACATGCTCTACCAGAGGCCTGGACATCAGGAAAGAAAAAGCAGATGTCCTCTGCCCAGGCGGCTGCCCTCTAGAGGAGTTCTCCGTGTTTGGGCACATAGTGTATGCGTCTGTGTCGAGCATATGTGGCGCCGCTGTCCACAG
Seq A exon
GGGGGTAATTGGCCACTCAGGGGGACCCGTGAGAATCTATAGCCTGCCAGGTCGGGAAAACTATTCCTCAGTAGTTGCCAATGGCATCCAGTCTCAGATGCTTTCCAGATGGTCTGCTTCTTTCACAGTGACAA
Seq C2 exon
AAGGCAAAAGTGGTACCCAGGAAGCCACAGGACAAGCAGTGTCCACAGCACATCCAGCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021844-'8-5,'8-4,9-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.773
Domain overlap (PFAM):
C1:
PF0381514=LCCL=PU(53.3=90.6)
A:
PF0381514=LCCL=PD(45.6=89.1)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCATCCCTATCACATGCTCT
R:
CTGTTGCTGGATGTGCTGTGG
Band lengths:
219-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]