RnoEX0022657 @ rn6
Exon Skipping
Gene
ENSRNOG00000005286 | Coch
Description
cochlin [Source:RGD Symbol;Acc:1308536]
Coordinates
chr6:72361988-72363731:+
Coord C1 exon
chr6:72361988-72362144
Coord A exon
chr6:72363061-72363194
Coord C2 exon
chr6:72363669-72363731
Length
134 bp
Sequences
Splice sites
3' ss Seq
CTGTAACTCTTGCATTGCAGGGG
3' ss Score
7.65
5' ss Seq
CCAGTAGGT
5' ss Score
5.41
Exon sequences
Seq C1 exon
TGCCCATCCCCATCACCTGCTTTACCAGAGGCCTGGATATCCGGAAAGAAAAAGCGGATGTTCTCTGCCCAGGAGGCTGCTCTCTGGAGGAATTTTCTGTGTTTGGGAACATAGTGTATGCCTCGGTGTCCAGCATCTGCGGGGCTGCTGTCCACAG
Seq A exon
GGGAGTGATTGGCACCTCAGGGGGCCCAGTGCGTGTCTATAGCCTTCCTGGTAGAGAGAACTATTCCTCGGTGGCTGCCAATGGCATTCAGTCTCAGACCCTTTCCAGATGGTCTGCTTCCTTCGCTGTGACCA
Seq C2 exon
AAGGCAAAAGCAGTACCCAGGAAGCCACGGGACGGGCAGTGTCCACAGCCAATCCGCCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005286-'5-4,'5-3,6-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.682
Domain overlap (PFAM):
C1:
PF0381514=LCCL=PU(53.3=90.6)
A:
PF0381514=LCCL=PD(45.6=89.1)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCATCCCCATCACCTGCTTT
R:
CTGAGGGCGGATTGGCTGT
Band lengths:
218-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]