MmuEX6080940 @ mm10
Exon Skipping
Gene
ENSMUSG00000020953 | Coch
Description
cochlin [Source:MGI Symbol;Acc:MGI:1278313]
Coordinates
chr12:51595335-51597077:+
Coord C1 exon
chr12:51595335-51595491
Coord A exon
chr12:51596444-51596577
Coord C2 exon
chr12:51597015-51597077
Length
134 bp
Sequences
Splice sites
3' ss Seq
CTGTAATTCTTGCCTGGCAGGGG
3' ss Score
7.49
5' ss Seq
CCAGTAGGT
5' ss Score
5.41
Exon sequences
Seq C1 exon
TTCCCATTCCTGTCACCTGCTTTACCAGAGGCCTGGATATCCGAAAAGAGAAAGCAGATGTTCTCTGCCCAGGAGGCTGCTCTCTTGAGGAATTCTCTGTGTTTGGGAACATAGTGTATGCGTCAGTGTCCAGCATCTGCGGCGCTGCTGTCCATAG
Seq A exon
GGGAGTGATTGGCACCTCAGGGGGACCTGTGCGTGTCTACAGCCTTCCTGGTCGAGAGAACTACTCCTCGGTAGATGCCAACGGCATCCAGTCTCAGATGCTTTCCCGATGGTCCGCGTCCTTCGCTGTGACCA
Seq C2 exon
AAGGCAAAAGCAGTACCCAGGAAGCCACAGGACGGGCAGTGTCCACAGCCCACCCACCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020953-'7-8,'7-6,8-8=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.682
Domain overlap (PFAM):
C1:
PF0381514=LCCL=PU(53.3=90.6)
A:
PF0381514=LCCL=PD(45.6=89.1)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCATTCCTGTCACCTGCTT
R:
CTGAAGGTGGGTGGGCTGT
Band lengths:
219-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types