DreEX6054746 @ danRer10
Exon Skipping
Gene
ENSDARG00000024032 | coch
Description
coagulation factor C homolog, cochlin (Limulus polyphemus) [Source:ZFIN;Acc:ZDB-GENE-030616-403]
Coordinates
chr17:28730395-28731439:-
Coord C1 exon
chr17:28731283-28731439
Coord A exon
chr17:28731071-28731204
Coord C2 exon
chr17:28730395-28730463
Length
134 bp
Sequences
Splice sites
3' ss Seq
AACGTTTGTCTTTCATCCAGAGG
3' ss Score
6.91
5' ss Seq
CCCGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
TTGCAACGCCGATTAGCTGTGGGACTCGTGCGGTGGATCTGTCAGACACACATCTGCTGGTGCTCTGTCCAGCAAACTGCTCTCTGTGGAGCCTCTCAGTGTTTGGTTCTGGAGTTTATGCCTCTATTTCCAGCATATGCGGAGCAGCCATTCACAG
Seq A exon
AGGAATCATAGGTCTGTCTGGTGGACCAGTGGAGGTTCACGGACTGCAAGGGAGGACAAACTACCTCAGCTCTTACGCTCATGGTGTTCAGTCGCAGTCACTGTCGCAATGGAGCGCATCGTTCACTGTGGCCC
Seq C2 exon
GAACAATTAGCTTGCCTTTGGAAGTGTCCAGCCAAACCAGCAGTTCTGCCACCGTCGCATCTGGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000024032-'3-6,'3-5,4-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.021
Domain overlap (PFAM):
C1:
PF0381514=LCCL=PU(53.3=90.6)
A:
PF0381514=LCCL=PD(45.6=89.1)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCAACGCCGATTAGCTGT
R:
CTGCTCCAGATGCGACGGT
Band lengths:
226-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]