GgaEX6038451 @ galGal4
Exon Skipping
Gene
ENSGALG00000009920 | Protein
Description
Cochlin [Source:UniProtKB/Swiss-Prot;Acc:O42163]
Coordinates
chr5:33523369-33529251:+
Coord C1 exon
chr5:33523369-33523525
Coord A exon
chr5:33528732-33528865
Coord C2 exon
chr5:33529186-33529251
Length
134 bp
Sequences
Splice sites
3' ss Seq
ATTTTTCTTTCCTCCCTCAGAGG
3' ss Score
10.49
5' ss Seq
CTCGTAGGT
5' ss Score
4.63
Exon sequences
Seq C1 exon
CTTCCAATGCTATCACATGCTTTACAAGAGGACTTGACCTTAGAAAGGAGACAGAAGATGTCCTTTGCCCAGCAAACTGTCCTCTATGGCAATTCTATGTCTTTGGGGATGGAATTTATGCCTCTCTTTCCAGTGTCTGTGGAGCTGCCATACACAG
Seq A exon
AGGGGTGATCACCAACGCAGGAGGAGCTGTAAGAGTACAGACTCTCCCAGGACAGGAAAACTACCCGGCTGTACATGCCAATGGGATCCAGTCTCAGGTGCTCTCTAGATGGGCTTCATCTTTCTCAGTGACTC
Seq C2 exon
CAGGTACCAACAACCTAGCGCTTGAAGCAGTGGGACGATCAGTTGCAACAGCACGACCTGCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009920-'7-6,'7-5,9-6=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.217
Domain overlap (PFAM):
C1:
PF0381514=LCCL=PU(53.3=90.6)
A:
PF0381514=LCCL=PD(45.6=89.1)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCCAATGCTATCACATGCTT
R:
GTTGCAACTGATCGTCCCACT
Band lengths:
206-340
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]