BtaEX6079209 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016471 | PDPR
Description
pyruvate dehydrogenase phosphatase regulatory subunit [Source:HGNC Symbol;Acc:HGNC:30264]
Coordinates
chr18:1933614-1935538:-
Coord C1 exon
chr18:1935375-1935538
Coord A exon
chr18:1934475-1934596
Coord C2 exon
chr18:1933614-1933731
Length
122 bp
Sequences
Splice sites
3' ss Seq
CTGTGTTTACCTTGGGACAGGTG
3' ss Score
7.62
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
Exon sequences
Seq C1 exon
TGTCATAGGCATCCCCTGCGAGATCATCTCCCCCAAGAAAGTGGCCGAGCTGCACCCTCTGCTCAACGTGCACGACCTGGTGGGGGCCATGCACGTCCCCGAGGACGCAGTGGTGTCCTCCGCCGACGTGGCGCTCGCCCTGGCCAGTGCCGCCTCCCAGAGCG
Seq A exon
GTGTTCAGATCTATGACCGGACAAGTATTCTTCATGTCATGGTCAAAAAAGGTCAAGTCGCGGGCGTGGAGACAGATAAAGGACAGATCCAGTGCCAGTACTTTGTCAACTGTGCTGGTCAG
Seq C2 exon
TGGGCATACGAGCTGGGTCTGTGCAGCGAGGAGCCGGTTAGCATCCCGTTACACGCCTGCGAACACTTCTACCTTCTGACTCGCCCCTGGGAGACCCCGCTGCCGAGCAGCACGCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016471-'17-7,'17-6,18-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.075
Domain overlap (PFAM):
C1:
PF0126619=DAO=FE(15.3=100)
A:
PF0126619=DAO=FE(11.1=100)
C2:
PF0126619=DAO=FE(10.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCCCTGCGAGATCATCTCC
R:
CAGGGGCGAGTCAGAAGGTAG
Band lengths:
243-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]