MmuEX6038565 @ mm9
Exon Skipping
Gene
ENSMUSG00000033624 | Pdpr
Description
pyruvate dehydrogenase phosphatase regulatory subunit [Source:MGI Symbol;Acc:MGI:2442188]
Coordinates
chr8:113636587-113639141:+
Coord C1 exon
chr8:113636587-113636750
Coord A exon
chr8:113638642-113638763
Coord C2 exon
chr8:113639024-113639141
Length
122 bp
Sequences
Splice sites
3' ss Seq
TTTTCTTTGTTTTGAAATAGGTG
3' ss Score
10.67
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
Exon sequences
Seq C1 exon
TGTTGTAGGTATCCCTTCTGAGATCATCTCCCCGAAGAAAGTGGCTGAACTTCACCCTCTCCTCAATGTGCATGATCTGGTCGGGGCCATGTACGTTCCTGAGGATGCAGTAGTGTCCTCTGCTGATGTGGCTCTGGCCCTGGCAAGTGCTGCCTCCCAGAATG
Seq A exon
GTGTTCAGATTTATGACCGGACAAGTGTTCTTCACGTACTGATCAAAAAAGGTCAAGTTACTGGTGTGGAGACAGACAAAGGACAGATCGAATGCCAGTATTTTGTCAACTGTGCCGGGCAG
Seq C2 exon
TGGGCATATGAGCTGGGTCTGTCCAACGAGGAGCCGCTTAGTATCCCGCTACACGCCTGTGAACACTTCTACCTTCTGACTCGTCCCTGGGACACCCCTCTGCAGAGCAACACACCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033624-'6-6,'6-5,7-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.025
Domain overlap (PFAM):
C1:
PF0126619=DAO=FE(15.3=100)
A:
PF0126619=DAO=FE(11.1=100)
C2:
PF0126619=DAO=FE(10.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCTCCCCGAAGAAAGTGGC
R:
TTGGTGTGTTGCTCTGCAGAG
Band lengths:
258-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: