DreEX6067051 @ danRer10
Exon Skipping
Gene
ENSDARG00000103288 | PDPR
Description
pyruvate dehydrogenase phosphatase regulatory subunit [Source:HGNC Symbol;Acc:HGNC:30264]
Coordinates
chr18:50957363-50957965:+
Coord C1 exon
chr18:50957363-50957526
Coord A exon
chr18:50957614-50957735
Coord C2 exon
chr18:50957848-50957965
Length
122 bp
Sequences
Splice sites
3' ss Seq
GCGTGTGTTTCACCTGTCAGGTG
3' ss Score
8.6
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GGCTCTGGGCGTGGCCTGCAGCATCATCAAGCCTAAAGAGGTGTCAAAGCTCCACCCACTGGTTAATATTCATGATCTGGTGGGCGCTCTGCACCTGCCGGGGGACGCTGTGGTTTCTCCACCCGATGTCAATCATGCGATGGCGGTGGCGGCAGCAGCTAACG
Seq A exon
GTGTGCAGATCTTTGAACACACCAGCGTCACACACGTGCTGATGAAGAATGGTCACGTGGCCGCAGTGGAGACTGATCGCGGGTCAGTGGAGTGTGAATACTTTGTCAACTGTGCTGGACAG
Seq C2 exon
TGGGCGTATGAGCTGGGTCAGAGCAGTGAGGTGAAGGTGTCTGTTCCTCTGCATGGATGTGAGCACTTCTACCTGCTGACCAAACCTCTTTCTGAGCCGCTACCGTCCGACAGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000103288-'7-8,'7-6,9-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.025
Domain overlap (PFAM):
C1:
PF0126619=DAO=FE(15.3=100)
A:
PF0126619=DAO=FE(11.1=100)
C2:
PF0126619=DAO=FE(10.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGCAGCATCATCAAGCCTA
R:
AGCGGCTCAGAAAGAGGTTTG
Band lengths:
251-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]