RnoEX6060646 @ rn6
Exon Skipping
Gene
ENSRNOG00000022593 | Pdpr
Description
pyruvate dehydrogenase phosphatase regulatory subunit [Source:RGD Symbol;Acc:1308307]
Coordinates
chr19:43129434-43132122:-
Coord C1 exon
chr19:43131959-43132122
Coord A exon
chr19:43129836-43129957
Coord C2 exon
chr19:43129434-43129551
Length
122 bp
Sequences
Splice sites
3' ss Seq
TTTTCTTTGTTTTGAAATAGGTG
3' ss Score
10.67
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
Exon sequences
Seq C1 exon
TGTTGTAGGTATACCTTCTGAGATCATCTCCCCGAAGAAAGTGGCCGAACTTCATCCTCTCCTCAATGTGCATGATCTGGTGGGAGCCATGCACGTTCCTGAGGACGCAGTAGTGTCCTCTGCTGATGTGGCTCTTGCCCTGGCAAGTGCTGCCTCCCAGAATG
Seq A exon
GTGTTCAGATTTATGACCGGACAAGTGTTCTTCATGTACTGACCAAAAAAGGTCGAGTTACTGGTGTGGACACAGATAAAGGGCAGATCGAATGCCAGTATTTTGTCAACTGTGCTGGTCAG
Seq C2 exon
TGGGCGTATGAGCTGGGTTTGTCCAGCGAGGAGCCGGTTAGTATCCCGCTGCACGCCTGTGAGCACTTCTACCTTCTGACTCGTCCCTGCGACGCCCCTCTGCAGAGCAGCACACCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022593-'12-12,'12-11,13-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.025
Domain overlap (PFAM):
C1:
PF0126619=DAO=FE(15.3=100)
A:
PF0126619=DAO=FE(11.1=100)
C2:
PF0126619=DAO=FE(10.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTTCTGAGATCATCTCCCCG
R:
GCAGGGACGAGTCAGAAGGTA
Band lengths:
242-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]