HsaEX1001802 @ hg38
Exon Skipping
Gene
ENSG00000259972 | AC009120.6
Description
NA
Coordinates
chr16:74348867-74352203:-
Coord C1 exon
chr16:74352040-74352203
Coord A exon
chr16:74350617-74350738
Coord C2 exon
chr16:74348867-74349015
Length
122 bp
Sequences
Splice sites
3' ss Seq
CTTTCTTTACCTTGGAACAGGTG
3' ss Score
8.28
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
Exon sequences
Seq C1 exon
TGTTATAGGTATCCCTTCTGAGATCATCTCCCCCAAGAAAGTGGCCGAGCTTCACCATCTCCTCAACGTGCACGACCTGGTGGGGGCCATGCATGTTCCTGAGGATGCAGTGGTGTCTTCCGCTGACGTGGCTCTTGCCCTGGCAAGTGCTGCCTCCCAAAATG
Seq A exon
GTGTTCAGATCTATGACCGGACATCTGTTCTTCAAGTAATGGGCAAAAAAGGTCAAGTTACTGGAGTGGAGACCGATAAAGGACAGATTGAATGCCAGTATTTTGTCAACTGTGCTGGCCAG
Seq C2 exon
CTATTGTGGATGCTGATGGAAGAATTTATATTCGGAACTGGCAGGGTGGCATCCTGTCTGGGGGCTTTGAGAAGAACCCAAAACCAATTTTCACTGAGGGCAAGAACCAGCTGGAGATTCAGAATCTACAGGGGACTGGGATCACTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000259972_CASSETTE2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGAAAGTGGCCGAGCTTCA
R:
AATCTCCAGCTGGTTCTTGCC
Band lengths:
250-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains