GgaEX6008918 @ galGal4
Exon Skipping
Gene
ENSGALG00000002690 | PDPR
Description
pyruvate dehydrogenase phosphatase regulatory subunit [Source:HGNC Symbol;Acc:HGNC:30264]
Coordinates
chr11:1787115-1788809:-
Coord C1 exon
chr11:1788646-1788809
Coord A exon
chr11:1787601-1787722
Coord C2 exon
chr11:1787115-1787232
Length
122 bp
Sequences
Splice sites
3' ss Seq
CCTTCTTATGTCCTCTGCAGGTG
3' ss Score
12.52
5' ss Seq
CAGGTTGGA
5' ss Score
5.59
Exon sequences
Seq C1 exon
TGTGTCGGGGATCCCCTGCGAAATCATCAGCCCGAAGCAAGTGGCACAGCTCCACCCGCTCATCAACATCCACGACCTCGTGGGGGCCATGTATGTGCCCGAGGATGCACTCGTGCTGTCTGCCAACGTCAGCCTGGCTCTCGCGACGGCTGCCTCGCGGAACG
Seq A exon
GTGTCCAGATCCACGAGCGGACGAGCGTCAGTCATGTGTCAGTGCAGAAGGGTCGTGTGACCGGAGTTGAGACCGACAGAGGACACATCAAATGCCAGTACTTTGTCAACTGTGCTGGCCAG
Seq C2 exon
TGGGCCTACGAGTTGGGCCACTCCGGGGAGGAACCAGTCAACATCCCACTCCATGCCTGCGAGCACTTCTACCTCCTGACACATCCTTTGAAGGAACCTCTGGCAAGCAACGTCCCGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002690-'4-5,'4-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.049 C2=0.025
Domain overlap (PFAM):
C1:
PF0126619=DAO=FE(15.3=100)
A:
PF0126619=DAO=FE(11.1=100)
C2:
PF0126619=DAO=FE(10.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCGAAATCATCAGCCCGAAG
R:
GCTTGCCAGAGGTTCCTTCAA
Band lengths:
256-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]