BtaEX6080609 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014147 | KLKBL4
Description
Bos taurus protease, serine, 54 (PRSS54), mRNA. [Source:RefSeq mRNA;Acc:NM_001099044]
Coordinates
chr18:26208643-26213972:-
Coord C1 exon
chr18:26213881-26213972
Coord A exon
chr18:26211172-26211343
Coord C2 exon
chr18:26208643-26208901
Length
172 bp
Sequences
Splice sites
3' ss Seq
CCCCTGCACACCCCCTCCAGGTT
3' ss Score
8.74
5' ss Seq
CAGGCCAGT
5' ss Score
1.19
Exon sequences
Seq C1 exon
CTGCCCATGGTGTCTGCTGCGGCTGTCTCTGGGGATGGCAGCGATGAGAAGGGCGCTCCTGCTGCTGCTCTACGTCTCCCACGCATCTGCCA
Seq A exon
GTTGCGGCATCCAGAAAAGCAACATTGCGGTCACTTCCGAGGAGGGTTTGGTCGAAGAGCAGGAGTTCCCGTGGGTGGTGTCGCTGCAGGATTCCCAGTACACCCACCTGACTTTCGGCAGCATCCTCAGTGAGTTCTGGATCCTCAGCATCGCGTCCACCTTTCAGAACAG
Seq C2 exon
GAAGGACGCTGTGGCTATAATTGGTATAGCTAAGATGGATGCAAAACTGATTGCTCATGAAGAGTATCCTATCAACACCATCATCATCCATGAGGACTTCGACAATAAGACAATGAGAAATAACATAGCCCTCCTGAAGACAGACACGGCGATGCAGTTCAACAGCCTGGTCCGGCCCATCTGCTTCCTCGGCAGAAAGCTGAACAGGCCGCCAGTCCTGATGAACTGCTGGGTGGCAGGATGGAACCCCACATCTGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014147-'2-4,'2-3,5-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0008921=Trypsin=PU(19.5=74.1)
C2:
PF0008921=Trypsin=FE(39.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCTGCTGCTGCTCTACGTC
R:
GTTCAGCTTTCTGCCGAGGAA
Band lengths:
242-414
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]