RnoEX0070382 @ rn6
Exon Skipping
Gene
ENSRNOG00000023092 | Prss54
Description
serine protease 54 [Source:RGD Symbol;Acc:1307877]
Coordinates
chr19:9895891-9905946:+
Coord C1 exon
chr19:9895891-9895984
Coord A exon
chr19:9899826-9899997
Coord C2 exon
chr19:9905688-9905946
Length
172 bp
Sequences
Splice sites
3' ss Seq
GGCCCATGTTCCTTCTGCAGTTT
3' ss Score
8.18
5' ss Seq
CAGGTTAAT
5' ss Score
4.7
Exon sequences
Seq C1 exon
CTCACATGGTGCTCGCTGTGCTTCTCTCCGGGGATGGCAGAGCTGAGAGGGATCCTGCTGCTGCTGTTGTACATGTCCCACTCGTCATCTGCCA
Seq A exon
TTTGCGGCATCCAGAAAGCCAACATCGTGGACCAGTTACACGAGAACCTCGTGAGCAGCACCGAGTTCCCCTGGGTGGTGTCCATACAGGACAAACAGTACACCCACCTGGCGTTTGGCTGCATTCTCAGCGAGTTCTGGATCCTCAGCACCGCCTCCGCTCTCCAGAACAG
Seq C2 exon
GAAGGAGGTCATTGCTGTTGTTGGCATAGCTAACATGGATCCCCGGAACGCTGACCACAAAGAGTATTCAATCAATGCCATCATCCCCCACGAGAACTTTAACAACAACTCAATGCGCAATAACATAGCCCTCCTGAGGACAGACTCCGCCATACACTTCGACGACCTGGTCCAGCCCATCTGCTTCCTAGGCAAAAGTCTACACAAACCGACAGCCTTGAAGAACTGCTGGGTAGCAGGATGGAATCCCACGTCTGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000023092_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0008921=Trypsin=PU(20.0=75.9)
C2:
PF0008921=Trypsin=FE(39.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGTCCCACTCGTCATCTGC
R:
AGCAGTTCTTCAAGGCTGTCG
Band lengths:
253-425
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]