HsaEX6044139 @ hg19
Exon Skipping
Gene
ENSG00000103023 | PRSS54
Description
protease, serine, 54 [Source:HGNC Symbol;Acc:26336]
Coordinates
chr16:58319841-58327726:-
Coord C1 exon
chr16:58327636-58327726
Coord A exon
chr16:58324863-58325040
Coord C2 exon
chr16:58319841-58320099
Length
178 bp
Sequences
Splice sites
3' ss Seq
GCCCCGCACCTGCTCCGCAGGTT
3' ss Score
9.4
5' ss Seq
CAGGCCAGT
5' ss Score
1.19
Exon sequences
Seq C1 exon
CTGCCCATGGTGTCCGCGGCGGGTCTCTCTGGGGATGGCAAGATGCGAGGGGTGCTCCTGGTGCTGCTCGGCCTTCTCTATTCTTCCACCA
Seq A exon
GTTGTGGCGTCCAGAAAGCTTCCGTTTTCTACGGTCCTGACCCCAAGGAGGGCTTGGTCAGCAGCATGGAGTTCCCGTGGGTGGTGTCGCTGCAGGACTCCCAGTACACACACCTGGCTTTCGGCTGCATCCTGAGCGAGTTCTGGGTCCTCAGCATCGCATCCGCCATTCAGAACAG
Seq C2 exon
GAAGGACATTGTCGTTATAGTGGGTATAAGTAACATGGATCCTAGCAAGATTGCTCACACAGAGTATCCAGTCAATACCATCATCATCCATGAGGACTTTGATAACAACTCCATGAGCAACAACATAGCCCTCCTGAAGACAGACACAGCGATGCATTTTGGCAACCTGGTCCAGTCCATCTGCTTCCTCGGCAGAATGCTGCATACACCACCAGTCTTGCAGAACTGCTGGGTGTCAGGATGGAATCCCACATCTGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000103023-'2-3,'2-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0008921=Trypsin=PU(18.8=68.3)
C2:
PF0008921=Trypsin=PU(44.2=96.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGCTCGGCCTTCTCTATTC
R:
GCAAGACTGGTGGTGTATGCA
Band lengths:
250-428
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)