HsaEX6044139 @ hg38
Exon Skipping
Gene
ENSG00000103023 | PRSS54
Description
protease, serine 54 [Source:HGNC Symbol;Acc:HGNC:26336]
Coordinates
chr16:58285937-58293822:-
Coord C1 exon
chr16:58293732-58293822
Coord A exon
chr16:58290959-58291136
Coord C2 exon
chr16:58285937-58286195
Length
178 bp
Sequences
Splice sites
3' ss Seq
GCCCCGCACCTGCTCCGCAGGTT
3' ss Score
9.4
5' ss Seq
CAGGCCAGT
5' ss Score
1.19
Exon sequences
Seq C1 exon
CTGCCCATGGTGTCCGCGGCGGGTCTCTCTGGGGATGGCAAGATGCGAGGGGTGCTCCTGGTGCTGCTCGGCCTTCTCTATTCTTCCACCA
Seq A exon
GTTGTGGCGTCCAGAAAGCTTCCGTTTTCTACGGTCCTGACCCCAAGGAGGGCTTGGTCAGCAGCATGGAGTTCCCGTGGGTGGTGTCGCTGCAGGACTCCCAGTACACACACCTGGCTTTCGGCTGCATCCTGAGCGAGTTCTGGGTCCTCAGCATCGCATCCGCCATTCAGAACAG
Seq C2 exon
GAAGGACATTGTCGTTATAGTGGGTATAAGTAACATGGATCCTAGCAAGATTGCTCACACAGAGTATCCAGTCAATACCATCATCATCCATGAGGACTTTGATAACAACTCCATGAGCAACAACATAGCCCTCCTGAAGACAGACACAGCGATGCATTTTGGCAACCTGGTCCAGTCCATCTGCTTCCTCGGCAGAATGCTGCATACACCACCAGTCTTGCAGAACTGCTGGGTGTCAGGATGGAATCCCACATCTGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000103023_MULTIEX1-2/3=1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0008921=Trypsin=PU(18.8=68.3)
C2:
PF0008921=Trypsin=PU(44.2=96.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGCTCGGCCTTCTCTATTC
R:
GCAAGACTGGTGGTGTATGCA
Band lengths:
250-428
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains